/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkMeanSquareRegistrationFunction_h
#define itkMeanSquareRegistrationFunction_h

#include "itkPDEDeformableRegistrationFunction.h"
#include "itkPoint.h"
#include "itkLinearInterpolateImageFunction.h"
#include "itkCentralDifferenceImageFunction.h"

namespace itk
{
/**
 * \class MeanSquareRegistrationFunction
 *
 * This class encapsulate the PDE which drives the demons registration
 * algorithm. It is used by MeanSquareRegistrationFilter to compute the
 * output displacement field which will map a moving image onto a
 * a fixed image.
 *
 * Non-integer moving image values are obtained by using
 * interpolation. The default interpolator is of type
 * LinearInterpolateImageFunction. The user may set other
 * interpolators via method SetMovingImageInterpolator. Note that the input
 * interpolator must derive from baseclass InterpolateImageFunction.
 *
 * This class is templated over the fixed image type, moving image type,
 * and the displacement field type.
 *
 * \warning This filter assumes that the fixed image type, moving image type
 * and displacement field type all have the same number of dimensions.
 *
 * \sa MeanSquareRegistrationFilter
 * \ingroup FiniteDifferenceFunctions
 * \ingroup ITKRegistrationCommon
 */
template< typename TFixedImage, typename TMovingImage, typename TDisplacementField >
class ITK_TEMPLATE_EXPORT MeanSquareRegistrationFunction:
  public PDEDeformableRegistrationFunction< TFixedImage,
                                            TMovingImage, TDisplacementField >
{
public:
  ITK_DISALLOW_COPY_AND_ASSIGN(MeanSquareRegistrationFunction);

  /** Standard class type aliases. */
  using Self = MeanSquareRegistrationFunction;
  using Superclass = PDEDeformableRegistrationFunction< TFixedImage,
                                             TMovingImage, TDisplacementField >;
  using Pointer = SmartPointer< Self >;
  using ConstPointer = SmartPointer< const Self >;

  /** Method for creation through the object factory. */
  itkNewMacro(Self);

  /** Run-time type information (and related methods). */
  itkTypeMacro(MeanSquareRegistrationFunction,
               PDEDeformableRegistrationFunction);

  /** MovingImage image type. */
  using MovingImageType = typename Superclass::MovingImageType;
  using MovingImagePointer = typename Superclass::MovingImagePointer;

  /** FixedImage image type. */
  using FixedImageType = typename Superclass::FixedImageType;
  using FixedImagePointer = typename Superclass::FixedImagePointer;
  using IndexType = typename FixedImageType::IndexType;
  using SizeType = typename FixedImageType::SizeType;
  using SpacingType = typename FixedImageType::SpacingType;

  /** Displacement field type. */
  using DisplacementFieldType = typename Superclass::DisplacementFieldType;
  using DisplacementFieldPixelType = typename DisplacementFieldType::PixelType;
  using DisplacementFieldTypePointer = typename Superclass::DisplacementFieldTypePointer;

  /** Inherit some enums from the superclass. */
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;

  /** Inherit some enums from the superclass. */
  using PixelType = typename Superclass::PixelType;
  using RadiusType = typename Superclass::RadiusType;
  using NeighborhoodType = typename Superclass::NeighborhoodType;
  using FloatOffsetType = typename Superclass::FloatOffsetType;
  using TimeStepType = typename Superclass::TimeStepType;

  /** Interpolator type. */
  using CoordRepType = double;
  using InterpolatorType = InterpolateImageFunction< MovingImageType, CoordRepType >;
  using InterpolatorPointer = typename InterpolatorType::Pointer;
  using PointType = typename InterpolatorType::PointType;
  using DefaultInterpolatorType = LinearInterpolateImageFunction< MovingImageType, CoordRepType >;

  /** Covariant vector type. */
  using CovariantVectorType = CovariantVector< double, Self::ImageDimension >;

  /** Gradient calculator type. */
  using GradientCalculatorType = CentralDifferenceImageFunction< FixedImageType >;
  using GradientCalculatorPointer = typename GradientCalculatorType::Pointer;

  /** Set the moving image interpolator. */
  void SetMovingImageInterpolator(InterpolatorType *ptr)
  { m_MovingImageInterpolator = ptr; }

  /** Get the moving image interpolator. */
  InterpolatorType * GetMovingImageInterpolator()
  { return m_MovingImageInterpolator; }

  /** This class uses a constant timestep of 1. */
  TimeStepType ComputeGlobalTimeStep( void *itkNotUsed(GlobalData) ) const override
  { return m_TimeStep; }

  /** Return a pointer to a global data structure that is passed to
   * this object from the solver at each calculation.  */
  void * GetGlobalDataPointer() const override
  {
    auto * global = new GlobalDataStruct();

    return global;
  }

  /** Release memory for global data structure. */
  void ReleaseGlobalDataPointer(void *GlobalData) const override
  { delete (GlobalDataStruct *)GlobalData;  }

  /** Set the object's state before each iteration. */
  void InitializeIteration() override;

  /** This method is called by a finite difference solver image filter at
   * each pixel that does not lie on a data set boundary */
  PixelType  ComputeUpdate( const NeighborhoodType & neighborhood,
                                    void *globalData,
                                    const FloatOffsetType & offset = FloatOffsetType(0.0) ) override;

protected:
  MeanSquareRegistrationFunction();
  ~MeanSquareRegistrationFunction() override = default;
  void PrintSelf(std::ostream & os, Indent indent) const override;

  /** FixedImage image neighborhood iterator type. */
  using FixedImageNeighborhoodIteratorType = ConstNeighborhoodIterator< FixedImageType >;

  /** A global data type for this class of equation. Used to store
   * iterators for the fixed image. */
  struct GlobalDataStruct {
    FixedImageNeighborhoodIteratorType m_FixedImageIterator;
  };

private:
  /** Cache fixed image information. */
  SpacingType m_FixedImageSpacing;

  /** Function to compute derivatives of the fixed image. */
  GradientCalculatorPointer m_FixedImageGradientCalculator;

  /** Function to interpolate the moving image. */
  InterpolatorPointer m_MovingImageInterpolator;

  /** The global timestep. */
  TimeStepType m_TimeStep;

  /** Threshold below which the denominator term is considered zero. */
  double m_DenominatorThreshold;

  /** Threshold below which two intensity value are assumed to match. */
  double m_IntensityDifferenceThreshold;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkMeanSquareRegistrationFunction.hxx"
#endif

#endif
